Fish Tale Has DNA Hook: Students Find Bad
Labels
In a way, Dr. Ausubel said, their experiment is a return to an
earlier era of scientific inquiry. "Three hundred years ago, science
was less professionalized," he said, and contributions were made by
interested amateurs. "Perhaps the wheel is turning again where more
people can participate."
http://www.nytimes.com/2008/08/22/science/22fish.html
August 22, 2008
Fish Tale Has DNA Hook: Students Find Bad Labels
By JOHN SCHWARTZ
Many New York sushi restaurants and seafood markets are playing a game
of bait and switch, say two high school students turned high-tech
sleuths.
In a tale of teenagers, sushi and science, Kate Stoeckle and Louisa
Strauss, who graduated this year from the Trinity School in Manhattan,
took on a freelance science project in which they checked 60 samples
of seafood using a simplified genetic fingerprinting technique to see
whether the fish New Yorkers buy is what they think they are
getting.
They found that one-fourth of the fish samples with identifiable DNA
were mislabeled. A piece of sushi sold as the luxury treat white tuna
turned out to be Mozambique tilapia, a much cheaper fish that is often
raised by farming. Roe supposedly from flying fish was actually from
smelt. Seven of nine samples that were called red snapper were
mislabeled, and they turned out to be anything from Atlantic cod to
Acadian redfish, an endangered species.
What may be most impressive about the experiment is the ease with
which the students accomplished it. Although the testing technique is
at the forefront of research, the fact that anyone can take advantage
of it by sending samples off to a laboratory meant the kind of
investigative tools once restricted to Ph.D.'s and crime labs can
move into the hands of curious diners and amateur scientists
everywhere.
The project began, appropriately, over dinner about a year ago. Ms.
Stoeckle's father, Mark, is a scientist and early proponent of the
use of DNA bar coding, a technique that greatly simplifies the process
of identifying species. Instead of sequencing the entire genome, bar
coders - who have been developing their field only since 2003 -
examine a single gene. Dr. Stoeckle's specialty is birds, and he
admits that he tends to talk shop at the dinner table.
One evening at a sushi restaurant, Ms. Stoeckle recalled asking her
father, "Could you bar code sushi?"
Dr. Stoeckle replied, "Yeah, I think you could - and if you did
that, I think you'd be the first ones."
Ms. Stoeckle, who is now 19, was intrigued. She enlisted Ms. Strauss,
who is now 18.
Their field technique was simple, Ms. Stoeckle said. "We ate a lot
of sushi."
Or, as Dr. Stoeckle put it, "It involved shopping and eating, in
which they were already fluent."
They hit 4 restaurants and 10 grocery stores in Manhattan. Once the
samples were home, whether in doggie bags or shopping bags, they cut
away a small piece and preserved it in alcohol. They sent those off to
the University of Guelph in Ontario, where the Barcode of Life
Database project began. A graduate student there, Eugene Wong, works
on the Fish Barcode of Life (dubbed, inevitably, Fish-BOL) and agreed
to do the genetic analysis. He compared the teenagers' samples with
the global library of 30,562 bar codes representing nearly 5,500 fish
species. (Commercial labs will also perform the analysis for a
fee.)
Three hundred dollars' worth of meals later, the young researchers
had their data back from Guelph: 2 of the 4 restaurants and 6 of the
10 grocery stores had sold mislabeled fish.
Dr. Stoeckle said he was excited to see a technology used in a new
way. "The smaller and cheaper you make something," he said, "the
more uses it has." He compared bar coding to another high-tech
wonder turned everyday gadget, GPS.
Eventually, he predicted, the process will become more automatic,
cheaper and smaller so that a handheld device could perform a quick
analysis and connect to the database remotely. What his daughter did,
he said, is like dropping film off at the supermarket for developing.
The next generation could be more like a digital camera that displays
the results on the spot.
The results of Ms. Strauss and Ms. Stoeckle's research are being
published in Pacific Fishing magazine, a publication for commercial
fishermen. The sample size is too small to serve as an indictment of
all New York fishmongers and restaurateurs, but the results are
unlikely to be a mere statistical fluke.
The experiment does serve as a general caveat emptor for fish lovers,
particularly because the students, their parents and their academic
mentor all declined to give the names of the vendors, citing fear of
lawsuits. Besides, they noted, mislabeling could occur at any stage of
the process.
Dr. Stoeckle was willing to divulge the name of one fish market whose
products were accurately labeled in the test: Leonards' Seafood and
Prime Meats on Third Avenue. John Leonard, the owner, said he was not
surprised to find that his products passed the bar code test. "We go
down and pick the fish out ourselves," he said. "We know what
we're doing." As for the technology, Mr. Leonard said, "it's
good for the public," since "it would probably keep restaurateurs
and owners of markets more on their toes."
Ms. Stoeckle said the underlying message of the research was simple:
"If you're paying for white tuna and you're eating tilapia, I
think you'd want to know that."
Although the students did not present the project for a grade at
school, they made sure to mention it on their college applications.
Both will enroll at Johns Hopkins University this fall.
Neither, however, expects to major in the sciences. "I've always
been into art history," Ms. Strauss said, "which is really
different from this." Ms. Stoeckle, who is the granddaughter of the
entertainer and arts patron Kitty Carlisle Hart, is thinking about
studying writing or psychology. But that, they said, is the point.
"If we found it interesting - which we did - I think lots of
people like us can do it, too," Ms. Stoeckle said.
Peter B. Marko, a professor at Clemson University who used a more
detailed genetic technique in a 2004 paper to show that red snapper
was commonly mislabeled, called their project "quite remarkable,"
though he added that genetic analysis had been simplified to the point
that high school students could now perform the task without sending
samples off.
Mr. Marko prefers to work with whole genomes - "more information
is better," he explained - which can be sequenced now with
lightning speed. He plans to perform a broad genetic comparison of
fishes that were separated millions of years ago by the rise of the
Isthmus of Panama. "The technology is allowing us to ask questions
that really would not have been possible in the past."
The students worked under the tutelage of Jesse H. Ausubel of
Rockefeller University, a champion of the DNA bar coding technique. As
for Ms. Strauss and Ms. Stoeckle, Dr. Ausubel said they "have
contributed to global science" by adding to the database, built on a
model similar to that of Wikipedia, in which people around the world
can contribute.
In a way, Dr. Ausubel said, their experiment is a return to an
earlier era of scientific inquiry. "Three hundred years ago, science
was less professionalized," he said, and contributions were made by
interested amateurs. "Perhaps the wheel is turning again where more
people can participate."